Showing posts with label Biosignal Processing. Show all posts
Showing posts with label Biosignal Processing. Show all posts

Sunday, 10 July 2011

BIOMEDICAL SIGNALS DATABASE

ECG DATABASES

BIO-SIGNALS DATABASE

GAIT DATABASES

EEG & NEUROLOGY DATABASE

Thursday, 23 June 2011

SIGNAL PROCESSING CODES IN MATLAB

FIR filter design.
  cfirpm - Complex and nonlinear phase equiripple FIR filter design.
  fir1 - Window based FIR filter design - low, high, band, stop, multi.
  fir2 - FIR arbitrary shape filter design using the frequency sampling method.
  fircls - Constrained Least Squares filter design - arbitrary response.
  fircls1 - Constrained Least Squares FIR filter design - low and highpass.
  firgauss - FIR Gaussian digital filter design.
  firls - Optimal least-squares FIR filter design.
  firpm - Parks-McClellan optimal equiripple FIR filter design.
  firpmord - Parks-McClellan optimal equiripple FIR order estimator.
  firrcos - Raised cosine FIR filter design.
  intfilt - Interpolation FIR filter design.
  kaiserord - Kaiser window design based filter order estimation.
  sgolay - Savitzky-Golay FIR smoothing filter design.

  IIR digital filter design.
  butter - Butterworth filter design.
  cheby1 - Chebyshev Type I filter design (passband ripple).
  cheby2 - Chebyshev Type II filter design (stopband ripple).
  ellip - Elliptic filter design.
  maxflat - Generalized Butterworth lowpass filter design.
  yulewalk - Yule-Walker filter design.

  IIR filter order estimation.
  buttord - Butterworth filter order estimation.
  cheb1ord - Chebyshev Type I filter order estimation.
  cheb2ord - Chebyshev Type II filter order estimation.
  ellipord - Elliptic filter order estimation.

  Filter analysis.
  abs - Magnitude.
  angle - Phase angle.
  filternorm - Compute the 2-norm or inf-norm of a digital filter.
  freqs - Laplace transform frequency response.
  freqspace - Frequency spacing for frequency response.
  freqz - Z-transform frequency response.
  fvtool - Filter Visualization Tool.
  grpdelay - Group delay.
  impz - Discrete impulse response.
  phasedelay - Phase delay of a digital filter.
  phasez - Digital filter phase response (unwrapped).
  zerophase - Zero-phase response of a real filter.
  zplane - Discrete pole-zero plot.

  Filter implementation.
  conv - Convolution.
  conv2 - 2-D convolution.
  convmtx - Convolution matrix.
  deconv - Deconvolution.
  fftfilt - Overlap-add filter implementation.
  filter - Filter implementation.
  filter2 - Two-dimensional digital filtering.
  filtfilt - Zero-phase version of filter.
  filtic - Determine filter initial conditions.
  latcfilt - Lattice filter implementation.
  medfilt1 - 1-Dimensional median filtering.
  sgolayfilt - Savitzky-Golay filter implementation.
  sosfilt - Second-order sections (biquad) filter implementation.
  upfirdn - Upsample, FIR filter, downsample.

  Discrete-time filter objects.
  dfilt - Family of discrete-time filters.
  dfilt/df1 - Direct-form I.
  dfilt/df1sos - Direct-form I, second-order sections.
  dfilt/df1t - Direct-form I transposed.
  dfilt/df1tsos - Direct-form I transposed, second-order sections.
  dfilt/df2 - Direct-form II.
  dfilt/df2sos - Direct-form II, second-order sections.
  dfilt/df2t - Direct-form II transposed.
  dfilt/df2tsos - Direct-form II transposed, second-order sections.
  dfilt/dffir - Direct-form FIR.
  dfilt/dffirt - Direct-form FIR transposed.
  dfilt/dfsymfir - Direct-form symmetric FIR.
  dfilt/dfasymfir - Direct-form antisymmetric FIR.
  dfilt/latticeallpass - Lattice allpass.
  dfilt/latticear - Lattice autoregressive (AR).
  dfilt/latticearma - Lattice autoregressive moving-average (ARMA).
  dfilt/latticemamax - Lattice moving-average (MA) for maximum phase.
  dfilt/latticemamin - Lattice moving-average (MA) for minimum phase.
  dfilt/scalar - Scalar gain filter.
  dfilt/statespace - State-space.
  dfilt/cascade - Cascade (filters arranged in series).
  dfilt/parallel - Parallel (filters arranged in parallel).

  Discrete-time filter methods.
  dfilt/addstage - Add a stage to a cascade or parallel filter.
  dfilt/cascade - Cascade filter objects.
  dfilt/coefficients - Filter coefficients.
  dfilt/convert - Convert structure of DFILT object.
  dfilt/copy - Copy discrete-time filter.
  dfilt/fcfwrite - Write a filter coefficient file.
  dfilt/filter - Execute ("run") discrete-time filter.
  dfilt/firtype - Determine the type (1-4) of a linear phase FIR filter.
  dfilt/freqz - Digital filter frequency response.
  dfilt/grpdelay - Group delay of a digital filter.
  dfilt/impz - Impulse response.
  dfilt/impzlength - Length of the impulse response for a digital filter.
  dfilt/info - Filter information.
  dfilt/isallpass - True for allpass filter.
  dfilt/iscascade - True for cascaded filter.
  dfilt/isfir - True for FIR filter.
  dfilt/islinphase - True for linear phase filter.
  dfilt/ismaxphase - True if maximum phase.
  dfilt/isminphase - True if minimum phase.
  dfilt/isparallel - True for filter with parallel sections.
  dfilt/isreal - True for filter with real coefficients.
  dfilt/isscalar - True if scalar filter.
  dfilt/issos - True if second-order section filter.
  dfilt/isstable - True if the filter is stable.
  dfilt/nsections - Number of sections in a discrete-filter.
  dfilt/nstages - Number of stages in a cascade or parallel filter.
  dfilt/nstates - Number of states in discrete-time filter.
  dfilt/order - Filter order.
  dfilt/parallel - Connect filters in parallel.
  dfilt/phasez - Phase response of a discrete-time filter.
  dfilt/removestage - Remove a stage in a cascade or parallel filter.
  dfilt/reset - Reset discrete-time filter.
  dfilt/setstage - Set a stage in a cascade or parallel filter.
  dfilt/sos - Convert to second-order-sections.
  dfilt/ss - Discrete-time filter to state-space conversion.
  dfilt/stepz - Step response.
  dfilt/tf - Convert to transfer function.
  dfilt/zerophase - Zero-phase response.
  dfilt/zpk - Discrete-time filter zero-pole-gain conversion.
  dfilt/zplane - Pole/Zero plot

  Filter States Object.
  filtstates/dfiir - Direct-form IIR filter states.

  Filter States methods.
  filtstates/double - Convert a to a double precision vector.
  filtstates/single - Convert a to a single precision vector.

  Analog filter design, transformation, and discretization
   Analog lowpass filter prototypes.
  besselap - Bessel filter prototype.
  buttap - Butterworth filter prototype.
  cheb1ap - Chebyshev Type I filter prototype (passband ripple).
  cheb2ap - Chebyshev Type II filter prototype (stopband ripple).
  ellipap - Elliptic filter prototype.

  Analog filter design.
  besself - Bessel analog filter design.
  butter - Butterworth filter design.
  cheby1 - Chebyshev Type I filter design.
  cheby2 - Chebyshev Type II filter design.
  ellip - Elliptic filter design.

  Analog filter transformation.
  lp2bp - Lowpass to bandpass analog filter transformation.
  lp2bs - Lowpass to bandstop analog filter transformation.
  lp2hp - Lowpass to highpass analog filter transformation.
  lp2lp - Lowpass to lowpass analog filter transformation.

  Filter discretization.
  bilinear - Bilinear transformation with optional prewarping.
  impinvar - Impulse invariance analog to digital conversion.

  Linear system transformations
  latc2tf - Lattice or lattice ladder to transfer function conversion.
  polyscale - Scale roots of polynomial.
  polystab - Polynomial stabilization.
  residuez - Z-transform partial fraction expansion.
  sos2ss - Second-order sections to state-space conversion.
  sos2tf - Second-order sections to transfer function conversion.
  sos2zp - Second-order sections to zero-pole conversion.
  ss2sos - State-space to second-order sections conversion.
  ss2tf - State-space to transfer function conversion.
  ss2zp - State-space to zero-pole conversion.
  tf2latc - Transfer function to lattice or lattice ladder conversion.
  tf2sos - Transfer Function to second-order sections conversion.
  tf2ss - Transfer function to state-space conversion.
  tf2zpk - Discrete-time transfer function to zero-pole conversion.
  zp2sos - Zero-pole to second-order sections conversion.
  zp2ss - Zero-pole to state-space conversion.
  zp2tf - Zero-pole to transfer function conversion.

  Windows
  barthannwin - Modified Bartlett-Hanning window.
  bartlett - Bartlett window.
  blackman - Blackman window.
  blackmanharris - Minimum 4-term Blackman-Harris window.
  bohmanwin - Bohman window.
  chebwin - Chebyshev window.
  flattopwin - Flat Top window.
  gausswin - Gaussian window.
  hamming - Hamming window.
  hann - Hann window.
  kaiser - Kaiser window.
  nuttallwin - Nuttall defined minimum 4-term Blackman-Harris window.
  parzenwin - Parzen (de la Valle-Poussin) window.
  rectwin - Rectangular window.
  triang - Triangular window.
  tukeywin - Tukey window.
  wvtool - Window Visualization Tool.
  window - Window function gateway.

  Window objects.
  sigwin - Family of windows.
  sigwin/bartlett - Bartlett window.
  sigwin/barthannwin - Modified Bartlett-Hanning window.
  sigwin/blackman - Blackman window.
  sigwin/blackmanharris - Minimum 4-term Blackman-Harris window.
  sigwin/bohmanwin - Bohman window.
  sigwin/chebwin - Chebyshev window.
  sigwin/flattopwin - Flat Top window.
  sigwin/gausswin - Gaussian window.
  sigwin/hamming - Hamming window.
  sigwin/hann - Hann window.
  sigwin/kaiser - Kaiser window.
  sigwin/nuttallwin - Nuttall defined minimum 4-term Blackman-Harris window.
  sigwin/parzenwin - Parzen (de la Valle-Poussin) window.
  sigwin/rectwin - Rectangular window.
  sigwin/triang - Triangular window.
  sigwin/tukeywin - Tukey window.

  Window object methods.
  sigwin/generate - Generate a window vector.

  Transforms
  bitrevorder - Permute input into bit-reversed order.
  czt - Chirp-z transform.
  dct - Discrete cosine transform.
  dftmtx - Discrete Fourier transform matrix.
  digitrevorder - Permute input into digit-reversed order.
  fft - Fast Fourier transform.
  fft2 - 2-D fast Fourier transform.
  fftshift - Swap vector halves.
  goertzel - Second-order Goertzel algorithm.
  hilbert - Discrete-time analytic signal via Hilbert transform.
  idct - Inverse discrete cosine transform.
  ifft - Inverse fast Fourier transform.
  ifft2 - Inverse 2-D fast Fourier transform.

  Cepstral analysis
  cceps - Complex cepstrum.
  icceps - Inverse Complex cepstrum.
  rceps - Real cepstrum and minimum phase reconstruction.

  Statistical signal processing and spectral analysis
  corrcoef - Correlation coefficients.
  corrmtx - Autocorrelation matrix.
  cov - Covariance matrix.
  cpsd - Cross Power Spectral Density.
  mscohere - Magnitude squared coherence estimate.
  pburg - Power Spectral Density estimate via Burg's method.
  pcov - Power Spectral Density estimate via the Covariance method.
  peig - Power Spectral Density estimate via the Eigenvector method.
  periodogram - Power Spectral Density estimate via the periodogram method.
  pmcov - Power Spectral Density estimate via the Modified Covariance method.
  pmtm - Power Spectral Density estimate via the Thomson multitaper method.
  pmusic - Power Spectral Density estimate via the MUSIC method.
  pwelch - Power Spectral Density estimate via Welch's method.
  pyulear - Power Spectral Density estimate via the Yule-Walker AR Method.
  rooteig - Sinusoid frequency and power estimation via the eigenvector algorithm.
  rootmusic - Sinusoid frequency and power estimation via the MUSIC algorithm.
  tfestimate - Transfer function estimate.
  xcorr - Cross-correlation function.
  xcorr2 - 2-D cross-correlation.
  xcov - Covariance function.

  Spectral Analysis Objects.
  spectrum - Family of spectrum objects.
  spectrum/burg - Burg method.
  spectrum/cov - Covariance method.
  spectrum/eigenvector - Eigenvector method.
  spectrum/mcov - Modified Covariance method.
  spectrum/mtm - Thomson multitaper method (MTM).
  spectrum/music - Multiple Signal Cassification (MUSIC) method.
  spectrum/periodogram - Periodogram method.
  spectrum/welch - Welch method.
  spectrum/yulear - Yule-Walker AR Method.

  Spectral Analysis Object Methods
  spectrum/msspectrum - Mean-square Spectrum estimate (for Welch and
  Periodogram).
  spectrum/powerest - Computes the powers and frequencies of
  sinusoids (for MUSIC and eigenvector objects).
  spectrum/psd - Power Spectral Density estimate.
  spectrum/pseudospectrum - Pseudospectrum estimate (for MUSIC and
  eigenvector).

  DSP Data Objects.
  dspdata - Family of DSP data objecs.
  dspdata/msspectrum - Mean-square spectrum data object.
  dspdata/psd - Power Spectral Density (PSD) data object.
  dspdata/pseudospectrum - Pseudospectrum data object.

  DSP Data Object Methods.
  dspdata/avgpower - Average power of a PSD data object.
  dspdata/centerdc - Shift the DC component to center of spectrum.
  dspdata/halfrange - Pseudospectrum calculated over half the Nyquist
  interval.
  dspdata/onesided - Spectrum calculated over half the Nyquist
  interval, but contains the full power.
  dspdata/normalizefreq- Normalize frequency specifications.
  dspdata/plot - Plot the data object.
  dspdata/twosided - Spectrum calculated over the whole Nyquist
  interval.
  dspdata/wholerange - Pseudospectrum calculated over the whole Nyquist
  interval.

  Parametric modeling
  arburg - AR parametric modeling via Burg's method.
  arcov - AR parametric modeling via covariance method.
  armcov - AR parametric modeling via modified covariance method.
  aryule - AR parametric modeling via the Yule-Walker method.
  ident - See the System Identification Toolbox.
  invfreqs - Analog filter fit to frequency response.
  invfreqz - Discrete filter fit to frequency response.
  prony - Prony's discrete filter fit to time response.
  stmcb - Steiglitz-McBride iteration for ARMA modeling.

  Linear prediction
  ac2poly - Autocorrelation sequence to prediction polynomial conversion.
  ac2rc - Autocorrelation sequence to reflection coefficients conversion.
  is2rc - Inverse sine parameters to reflection coefficients conversion.
  lar2rc - Log area ratios to reflection coefficients conversion.
  levinson - Levinson-Durbin recursion.
  lpc - Linear Predictive Coefficients using autocorrelation method.
  lsf2poly - Line spectral frequencies to prediction polynomial conversion.
  poly2ac - Prediction polynomial to autocorrelation sequence conversion.
  poly2lsf - Prediction polynomial to line spectral frequencies conversion.
  poly2rc - Prediction polynomial to reflection coefficients conversion.
  rc2ac - Reflection coefficients to autocorrelation sequence conversion.
  rc2is - Reflection coefficients to inverse sine parameters conversion.
  rc2lar - Reflection coefficients to log area ratios conversion.
  rc2poly - Reflection coefficients to prediction polynomial conversion.
  rlevinson - Reverse Levinson-Durbin recursion.
  schurrc - Schur algorithm.

  Multirate signal processing
  decimate - Resample data at a lower sample rate.
  downsample - Downsample input signal.
  interp - Resample data at a higher sample rate.
  interp1 - General 1-D interpolation. (MATLAB Toolbox)
  resample - Resample sequence with new sampling rate.
  spline - Cubic spline interpolation.
  upfirdn - Up sample, FIR filter, down sample.
  upsample - Upsample input signal.

  Waveform generation
  chirp - Swept-frequency cosine generator.
  diric - Dirichlet (periodic sinc) function.
  gauspuls - Gaussian RF pulse generator.
  gmonopuls - Gaussian monopulse generator.
  pulstran - Pulse train generator.
  rectpuls - Sampled aperiodic rectangle generator.
  sawtooth - Sawtooth function.
  sinc - Sinc or sin(pi*x)/(pi*x) function
  square - Square wave function.
  tripuls - Sampled aperiodic triangle generator.
  vco - Voltage controlled oscillator.

  Specialized operations
  buffer - Buffer a signal vector into a matrix of data frames.
  cell2sos - Convert cell array to second-order-section matrix.
  cplxpair - Order vector into complex conjugate pairs.
  demod - Demodulation for communications simulation.
  dpss - Discrete prolate spheroidal sequences (Slepian sequences).
  dpssclear - Remove discrete prolate spheroidal sequences from database.
  dpssdir - Discrete prolate spheroidal sequence database directory.
  dpssload - Load discrete prolate spheroidal sequences from database.
  dpsssave - Save discrete prolate spheroidal sequences in database.
  eqtflength - Equalize the length of a discrete-time transfer function.
  modulate - Modulation for communications simulation.
  seqperiod - Find minimum-length repeating sequence in a vector.
  sos2cell - Convert second-order-section matrix to cell array.
  specgram - Spectrogram, for speech signals.
  stem - Plot discrete data sequence.
  strips - Strip plot.
  udecode - Uniform decoding of the input.
  uencode - Uniform quantization and encoding of the input into N-bits.

  Graphical User Interfaces
   fdatool - Filter Design and Analysis Tool.
  fvtool - Filter Visualization Tool.
  sptool - Signal Processing Tool.
  wintool - Window Design and Analysis Tool.
  wvtool - Window Visualization Tool.

To know the codes of signal processing, type help signal in command line of your matlab version .

Click blow to download Matlab signal processing  study materials :

1.) Signal Processing Toolbox User guide
2.) Practical Statistical signal processing using Matlab
3.) MIT Signal Processing notes

Saturday, 14 August 2010

Phd & PostDoc positions in Medical Engineering - Singapore

Project Topics :

1.) Statistical modelling for brain imaging modalities
2.) Non parametric & graphical modeling for analyzing electrophysiology data
3.) Epileptic seizure modeling
4.) Neural implant for suppression of seizures
5.) Brain disorders diagnosis using EEG & other brain signals
6.) Brain signals compression for Brain Computer interfaces & epilepsy patients monitoring
7.) Bayesian multiscale modeling of cell physiology
8.) Stochastic modeling and control engineering in the context of tissue generation.

Collobration of Institutes :
1.) RIKEN Brain Science Institute, MIT and MGH, Harvard University
2.) Singapore-MIT Alliance for Research & Technology (SMART)
3.) Nanyang Technological University, Singapore

How to Apply:

Send your CV, motivational letter, 3 references & publications list to :

Prof. Justin Dauwels
Nanyang Technological University
School of Electrical & Electronic Engineering
Singapore
recruitment@dauwels.com


Further Details :
1.) Research Scholarships in NTU,Singapore
2.) Living Guide in Singapore

Monday, 19 April 2010

Friday, 26 March 2010

BIOMEDICAL PROJECTS - EMG

EMG PROJECTS

1.) EMG-based Tele-operation of a Robot Arm in Planar Catching Movements using ARMAX Model and Trajectory Monitoring Techniques
2.) Lightweight embedded system for acquiring simultaneous electro-myogenic activity and movement data (Function-EMG)
3.) Wireless EMG transmission
4.) EMG diagnostic system
5.) Electrical apparatus for medical treatment using EMG envelope signal
6.) Apparatus for producing a model EMG signal from a measured EMG signal
7.) Power spectrum analysis of the EMG pattern in normal and diseased muscles
8.) Simultaneous and nonlinear identification of mechanical and reflex properties of human elbow joint muscles
9.) Myoelectric tele-operation of a complex robotic hand
10.) An EMG controlled pointing device using neural network
11.) Control of Multifunction Myoelectric Hand using a Real-Time EMG Pattern Recognition
12.) A wavelet-based continuous classification scheme for multifunction myoelectric control
13.) Real-time intelligent pattern recognition algorithm for surface EMG signals
14.) Multifunction prosthesis and orthosis control via micro-computer identification of temporal pattern differences in single-site myoelectric signals
15.) Intention detection using a neuro-fuzzy EMG classifier
16.) Application of adaptive neuro-fuzzy inference system for epileptic seizure detection using feature extraction
17.) Functional Separation of EMG Signals Via ARMA Identification Methods for Prosthesis Control Purposes
18.) Neuro-Fuzzy Surface EMG Pattern Recognition For Multifunctional Hand Prosthesis Control
19.) Optimized Gaussian mixture models for upper limb motion classification
20.) Continuous myoelectric control for powered prostheses using hidden Markov models
21.) Classification of the myoelectric signal using time–frequency based representations
22.) A human-assisting manipulator tele-operated by EMG signals and arm motions
23.) EMG classification for prehensile posture using cascaded architecture of neural networks with self-organizing maps
24.) Support Vector Machine Based Classification Scheme for Myoelectric Control Applied to Upper Limb
25.) EMG-Based Prediction of Shoulder and Elbow Kinematics in Able-Bodied and Spinal Cord Injured Individuals
26.) Recognition of forearm motions from EMG signals by error back propagation typed neural network using entropy
27.) Differentiating Type of Muscle Movement via AR Modelling and Neural Network Classification
28.) Blind Separation of Linear Instantaneous Mixtures of Non-stationary Surface Myoelectric Signals
29.) Selectivity of spatial filters for surface EMG detection from the tibialis anterior muscle
30.) EMG-based Hands-Free Wheelchair control with EOG Attention Shift Detection
31.) FINGER MOVEMENT CLASSIFICATION USING FOREARM EMG SIGNALS

Tuesday, 9 October 2007

BIOSIGNALS

Biosignal is a summarizing term for all kinds of signals that can be (continually) measured and monitored from biological beings. The term biosignal is often used to mean bio-electrical signal but in fact, biosignal refers to both electrical and non-electrical signals.

Electrical biosignals ("bio-electrical" signals) are usually taken to be (changes in) electrical currents produced by the sum of electrical potential differences across a specialized tissue, organ or cell system like the nervous system. Thus, among the best-known bio-electrical signals are :

1.)Electroencephalogram (EEG)

EEG WAVES

2.)Magnetoencephalogram (MEG)

MagnetoEncephalogram (MEG)

3.)Galvanic skin response (GSR)

galvanic skin response

4.)Electrocardiogram (ECG)

ELECTROCARDIOGRAM

5.)Electromyogram (EMG)

ELECTROMYOGRAM (EMG)

Electrical currents and changes in electrical resistances across tissues can also be measured from plants.

Bio-signals may also refer to any non-electrical signal that is capable of being monitored from biological beings, such as mechanical signals (e.g. the mechanomyogram or MMG), acoustic signals (e.g. phonetic and non-phonetic utterances, breathing) and visual signals (e.g. movements).

BIOMEDICAL BOOKS

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